sparklyr: a test drive on YARN

Christos - Iraklis Tsatsoulis R, Spark 2 Comments

sparklyr is a new R front-end for Apache Spark, developed by the good people at RStudio. It offers much more functionality compared to the existing SparkR interface by Databricks, allowing both dplyr-based data transformations, as well as access to the machine learning libraries of both Spark and H2O Sparkling Water. Moreover, the latest RStudio IDE v1.0 now offers native support …

Nonlinear regression using Spark – Part 2: sum-of-squares objective functions

Constantinos Voglis Data Science, Spark 4 Comments

This post is the second one in a series that discusses algorithmic and implementation issues about nonlinear regression using Spark. In the previous post we identified a small window for contribution into Spark MLlib by adding methods for nonlinear regression, starting with the definition and implementation of a general nonlinear model. We remind the reader that regression is essentially an …

Classification in Spark 2.0: “Input validation failed” and other wondrous tales

Christos - Iraklis Tsatsoulis Data Science, Spark 6 Comments

Spark 2.0 has been released since last July but, despite the numerous improvements and new features, several annoyances still remain and can cause headaches, especially in the Spark machine learning APIs. Today we’ll have a look at some of them, inspired by a recent answer of mine in a Stack Overflow question (the question was about Spark 1.6 but, as …

Nonlinear regression using Spark – Part 1: Nonlinear models

Constantinos Voglis Spark 1 Comment

Regression constitutes a very important topic in supervised learning. Its goal is to predict the value of one or more continuous target variables (responses) given the value of a -dimensional vector of input variables (predictors). More specifically, given a training data set comprising of observations , where , together with corresponding target values , the goal is to predict the …

Limitations of Spark MLlib linear algebra module

Christos - Iraklis Tsatsoulis Spark 0 Comments

A couple of days ago I stumbled upon some unexpected behavior of Spark MLlib (v. 1.5.2), while trying some ultra-simple operations on vectors. Consider the following Pyspark snippet: Clearly, what happens is that the unary operator – (minus) for vectors fails, giving errors for expressions like -x and -y+x, although x-y behaves as expected. The result of the last operation, …

Augmenting PCA functionality in Spark 1.5

Christos - Iraklis Tsatsoulis Dimensionality Reduction, Spark 7 Comments

Surprisingly enough, although the relatively new Spark ML library (not to be confused with Spark MLlib) includes a method for principal components analysis (PCA), there is no way to extract some very useful information regarding the PCA transformation, namely the resulting eigenvalues (check the Python API documentation); and, without the eigenvalues, one cannot compute the proportion of variance explained (PVE), …

Dataframes from CSV files in Spark 1.5: automatic schema extraction, neat summary statistics, & elementary data exploration

Christos - Iraklis Tsatsoulis Big Data, Spark 19 Comments

In a previous post, we glimpsed briefly at creating and manipulating Spark dataframes from CSV files. In the couple of months since, Spark has already gone from version 1.3.0 to 1.5, with more than 100 built-in functions introduced in Spark 1.5 alone; so, we thought it is a good time for revisiting the subject, this time also utilizing the external …

Development and deployment of Spark applications with Scala, Eclipse, and sbt – Part 2: A Recommender System

Constantinos Voglis Big Data, Spark 10 Comments

In our previous post, we demonstrated how to setup the necessary software components, so that we can develop and deploy Spark applications with Scala, Eclipse, and sbt. We also included the example of a simple application. In this post, we are taking this demonstration one step further. We discuss a more serious application of a recommender system and present the …

Development and deployment of Spark applications with Scala, Eclipse, and sbt – Part 1: Installation & configuration

Constantinos Voglis Big Data, Spark 21 Comments

The purpose of this tutorial is to setup the necessary environment for development and deployment of Spark applications with Scala. Specifically, we are going to use the Eclipse IDE for development of applications and deploy them with spark-submit. The glue that ties everything together is the sbt interactive build tool. The sbt tool provides plugins used to: Create an Eclipse …